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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68663417_68664526_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68663417 - 68664526
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGAA
5'SS Class:
major
3'SS Sequence:
ATTGTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTGTTTTTATAG
Flanking Amino Acid:
RFILYLGSKNVKNYMGLAIK
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.4
30.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
82.1
0.72
0.8
77
36.7
Minor 5ss
32.2
-2
3.4
42.7
44.5
Minor BPS
51.5
-0
1.7
59.56
42.8

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851