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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68669903_68670987_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68669903 - 68670987
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAAATG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACACTTTTAAAA
Flanking Amino Acid:
AQINDAKFHEISIIYHNSKK
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
35
-1.7
3.4
48
47.7
Minor BPS
52.8
0.08
1.3
56.83
36

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851