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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68671131_68674599_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68671131 - 68674599
Intron Length:
3469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTA
5'SS Class:
major
3'SS Sequence:
TGTTTTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTTTGTTTGACA
Flanking Amino Acid:
GGAPAEILQSSISSHLAGSI
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.2
35.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.5
0.64
0.9
74.4
35.3
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
62.4
0.38
1.8
73.66
38.8

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851