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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68674736_68675872_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68674736 - 68675872
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATA
Flanking Amino Acid:
ISYGCPEDSLMSRKAYFNGE
Intron Amino Acid Position:
1046

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
79.8
35.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.4
0.44
1
62.8
41.7
Minor 5ss
43.1
-0.8
2.9
54.5
43.9
Minor BPS
76.1
0.82
1.3
84.11
29.4

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851