Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68680086_68680784_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

68680086 - 68680784

Intron Length:

699

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGCTAC

5'SS Class:

major

3'SS Sequence:

TCTTTCTGTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

CTTTCTGTAAAG

Flanking Amino Acid:

SKAKGNRNKKVGRDKDKISQ

Intron Amino Acid Position:

1242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.2

63.1

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

72.6

0.51

1.1

74.3

34.3

Minor 5ss

46.6

-0.3

2.5

59.1

45.8

Minor BPS

51.6

-0

2.2

63.96

44.2

Associated Gene:

Gene:

LAMA4

Ensembl Gene ID:

ENSAPLG00000013937

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014625

68615641 - 68691491

75851