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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68683666_68684281_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68683666 - 68684281
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCACATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCCTCCACA
Flanking Amino Acid:
APGKAVKNIQINSVYSFSGC
Intron Amino Acid Position:
1419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
70.2
0.46
0.9
66.4
33.6
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
67.6
0.55
2
83.78
36.8

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851