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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68688209_68689203_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68688209 - 68689203
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATCT
Flanking Amino Acid:
LCDGRWHRIAVIRDANVVQL
Intron Amino Acid Position:
1547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
84.7
23
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
54.8
0.23
1.8
75.13
42.3

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851