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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68689324_68691345_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68689324 - 68691345
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCCTTAAAA
Flanking Amino Acid:
REPVFIGGVPESLLTSSLTT
Intron Amino Acid Position:
1587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84.8
0.78
0.8
76.9
37.3
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
88
1.19
1.1
93.09
25.3

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851