Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68696434_68696524_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

68696434 - 68696524

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGGGC

5'SS Class:

major

3'SS Sequence:

CTCCCCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTGAC

U12 Branch Point Sequence:

CCCGCCTGACCC

Flanking Amino Acid:

AAMTQSVVVQVGQCGNQVGC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.1

65.4

40.4

Major BPS

51.1

0.03

1.2

39.9

Major PPT

81.7

0.71

0.7

75.9

26.1

Minor 5ss

29.1

-2.4

3.5

32.5

42.6

Minor BPS

45.7

-0.3

1.9

50.11

46.6

Associated Gene:

Gene:

TUBE1

Ensembl Gene ID:

ENSAPLG00000014557

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015207

68696208 - 68708756

12549