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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68701036_68701647_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68701036 - 68701647
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATCC
5'SS Class:
major
3'SS Sequence:
TTCTTATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTTATAT
Flanking Amino Acid:
ITDVSGSGNNWAVGHKVYGC
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
67.4
32.1
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.8
78.5
34
Minor 5ss
33.9
-1.8
3
40.1
39.9
Minor BPS
70.4
0.72
1.6
88.88
35.7

Associated Gene:

Gene:
TUBE1
Ensembl Gene ID:
ENSAPLG00000014557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015207
68696208 - 68708756
12549