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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68701770_68703089_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68701770 - 68703089
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TAATTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCCTCCCTAATT
Flanking Amino Acid:
CFFIIHSMGGGTGSGLGTFV
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
77
0.61
0.9
74.8
39.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
67.1
0.62
1.7
80.27
42.1

Associated Gene:

Gene:
TUBE1
Ensembl Gene ID:
ENSAPLG00000014557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015207
68696208 - 68708756
12549