About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68704204_68704971_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68704204 - 68704971
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTAATTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TATTTTGTAACA
Flanking Amino Acid:
IVANLLLNLTSSARFEGSLN
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76.4
0.59
0.9
73.2
41.6
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
61.4
0.35
2
75.62
35.9

Associated Gene:

Gene:
TUBE1
Ensembl Gene ID:
ENSAPLG00000014557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015207
68696208 - 68708756
12549