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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68708095_68708597_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68708095 - 68708597
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCTC
5'SS Class:
major
3'SS Sequence:
ATTATTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATAACATCAACT
Flanking Amino Acid:
DRFMRLYKKKAHLHHYLQVD
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
70
40.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
70.9
0.47
0.9
65.3
40.5
Minor 5ss
41.2
-1
2.7
53.6
43.5
Minor BPS
54.2
0.21
1.9
74.48
41.2

Associated Gene:

Gene:
TUBE1
Ensembl Gene ID:
ENSAPLG00000014557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015207
68696208 - 68708756
12549