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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68711222_68712420_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68711222 - 68712420
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCCCA
5'SS Class:
major
3'SS Sequence:
ATTGCTGTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GCATAGATAACA
Flanking Amino Acid:
LQSTNYRLMSVYRNLPLVMK
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
60.3
40.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.9
0.51
1
69.5
41
Minor 5ss
38.8
-1.3
2.9
48.2
47.5
Minor BPS
43.2
-0.5
2.3
55.14
43

Associated Gene:

Gene:
CCN6
Ensembl Gene ID:
ENSAPLG00000014838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015459
68710418 - 68716073
5656