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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68713327_68716022_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
68713327 - 68716022
Intron Length:
2696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTCTGTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CACCTCTCAAAG
Flanking Amino Acid:
TIFIIPCTQQFFCRAQAHGP
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
55.5
0.12
1.2
59.8
40.5
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
45
-0.5
1.7
43.16
41.9

Associated Gene:

Gene:
CCN6
Ensembl Gene ID:
ENSAPLG00000014838
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018054
68711907 - 68716085
4179
ENSAPLT00000015459
68710418 - 68716073
5656