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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6882914_6883735_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6882914 - 6883735
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCACGGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CATTCTCTAACT
Flanking Amino Acid:
TSAPLMHSSAEKVMDLQEQP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.7
86.9
30.2
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
63.6
0.31
1
55.7
38.8
Minor 5ss
32.5
-2
3.9
50.4
46
Minor BPS
67
0.61
1.7
81.78
39.6

Associated Gene:

Gene:
RTN4
Ensembl Gene ID:
ENSAPLG00000005665
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005947
6882880 - 6915887
33008