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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6886184_6904812_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6886184 - 6904812

Intron Length:

18629

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATCTGT

5'SS Class:

major

3'SS Sequence:

TTTTAATTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCTTTTTTAATT

Flanking Amino Acid:

VFSAKLSKSSVVDLLYWRDI

Intron Amino Acid Position:

828

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

71.6

40.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.77

0.8

82.3

Minor 5ss

45.6

-0.5

2.9

65.6

45.5

Minor BPS

71.6

0.76

1.2

78.3

39.3

Associated Gene:

Gene:

RTN4

Ensembl Gene ID:

ENSAPLG00000005665

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005947

6882880 - 6915887

33008