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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68869603_68870193_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68869603 - 68870193
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTGTC
5'SS Class:
major
3'SS Sequence:
TCTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
TGTAACTCACCT
Flanking Amino Acid:
TGTLRTRGGTGVTLFVALYD
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.1
75.7
34.4
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
85.8
0.81
0.6
85.1
22.4
Minor 5ss
37.3
-1.4
3.3
52
45.2
Minor BPS
48
-0
2
71.31
44.7

Associated Gene:

Gene:
FYN
Ensembl Gene ID:
ENSAPLG00000014917
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015584
68833446 - 68909245
75800