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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68870291_68874043_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68870291 - 68874043
Intron Length:
3753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTTTCCTCACCT
Flanking Amino Acid:
KGEKFQILNSSEGDWWEARS
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
80.5
34.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
92.2
0.95
0.6
88.3
21.3
Minor 5ss
47.7
-0.2
2.8
67.9
37.2
Minor BPS
71.8
0.76
1.8
92.41
36.6

Associated Gene:

Gene:
FYN
Ensembl Gene ID:
ENSAPLG00000014917
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015584
68833446 - 68909245
75800