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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68874143_68875413_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
68874143 - 68875413
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
ATATTTCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTTACTA
Flanking Amino Acid:
VAPVDSIQAEEWYFGKLGRK
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
74.2
37
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
69.9
0.45
1.1
73.3
36.7
Minor 5ss
62.3
0.41
2.2
71.8
39.2
Minor BPS
72.8
0.71
1.5
82.43
32.9

Associated Gene:

Gene:
FYN
Ensembl Gene ID:
ENSAPLG00000014917
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015584
68833446 - 68909245
75800