About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68879902_68883443_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68879902 - 68883443
Intron Length:
3542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATT
Flanking Amino Acid:
TLQQLVQHYSEKADGLCFNL
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78
0.63
0.7
72.7
25.7
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
76.9
0.92
1.4
92.73
28.9

Associated Gene:

Gene:
FYN
Ensembl Gene ID:
ENSAPLG00000014917
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015584
68833446 - 68909245
75800