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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68887384_68889006_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68887384 - 68889006
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGCCA
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
IYIVTEYMSKGSLLDFLKDG
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
61.7
38.5
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
24.9
-2.9
3.1
30.5
42.8
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
FYN
Ensembl Gene ID:
ENSAPLG00000014917
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015584
68833446 - 68909245
75800