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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68889084_68889179_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68889084 - 68889179
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTTT
5'SS Class:
major
3'SS Sequence:
GTGTTTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCCTTTTAAAA
Flanking Amino Acid:
LPNLVDMAAQVAAGMAYIER
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.3
80.5
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.7
0.58
1
70.3
40.4
Minor 5ss
47.6
-0.2
2.6
67.4
43.7
Minor BPS
62.5
0.39
1.4
69.31
37

Associated Gene:

Gene:
FYN
Ensembl Gene ID:
ENSAPLG00000014917
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015584
68833446 - 68909245
75800