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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68889334_68900334_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68889334 - 68900334
Intron Length:
11001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATGCA
5'SS Class:
major
3'SS Sequence:
CTTCCTTCGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTAAGA
Flanking Amino Acid:
IEDNEYTARQGAKFPIKWTA
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.6
36.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
70.8
0.47
0.9
65.7
36
Minor 5ss
31.3
-2.1
3.4
41.7
44.9
Minor BPS
49.2
-0
2.3
68.02
44.4

Associated Gene:

Gene:
FYN
Ensembl Gene ID:
ENSAPLG00000014917
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015584
68833446 - 68909245
75800