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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68919778_68926905_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
68919778 - 68926905
Intron Length:
7128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
ATGTTCACAAGA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
45.4
-0.3
2
58.49
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015277
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015940
68919610 - 68933674
14065