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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6905021_6907527_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6905021 - 6907527

Intron Length:

2507

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

AGTTTCATAAGC

Flanking Amino Acid:

IQKSDEGHPFRAYLESDVAV

Intron Amino Acid Position:

897

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

84.7

28.3

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

85.9

0.81

0.8

80.6

31.5

Minor 5ss

37.2

-1.4

3.5

49.2

Minor BPS

52.6

0.06

1.9

66.19

39.1

Associated Gene:

Gene:

RTN4

Ensembl Gene ID:

ENSAPLG00000005665

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025046

6902497 - 6915887

13391

ENSAPLT00000005947

6882880 - 6915887

33008