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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69075200_69075831_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69075200 - 69075831
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGACATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTCTTTGACA
Flanking Amino Acid:
NFSGRMPCIELGDSIVHKAR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.8
0.63
0.9
70.8
39.4
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
78.7
0.9
1.1
82.02
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028742
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040146
69075023 - 69086664
11642