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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6907667_6913502_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6907667 - 6913502
Intron Length:
5836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTGCTTTTATTT
Flanking Amino Acid:
LVDDLVDSLKFAVLMWVFTY
Intron Amino Acid Position:
944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
50.3
0.09
1.5
65.14
40.2

Associated Gene:

Gene:
RTN4
Ensembl Gene ID:
ENSAPLG00000005665
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025046
6902497 - 6915887
13391
ENSAPLT00000005947
6882880 - 6915887
33008