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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69090768_69092501_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69090768 - 69092501
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TCTCTCCCATCT
Flanking Amino Acid:
IGASMGVLDTGGNVLALNTW
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
75.9
0.58
0.8
69.3
30.1
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
44.6
-0.3
2
66.08
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030380
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043465
69089539 - 69096030
6492
ENSAPLT00000028249
69085696 - 69092610
6915