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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69104173_69105349_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69104173 - 69105349
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTGGTGGTAATT
Flanking Amino Acid:
IPMTVGPPIAGLLRDHLGTY
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
43.3
-0.4
2.6
66.18
45.6

Associated Gene:

Gene:
SLC16A10
Ensembl Gene ID:
ENSAPLG00000008970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009331
69103937 - 69164751
60815