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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69108162_69126487_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69108162 - 69126487
Intron Length:
18326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTCCTCAACC
Flanking Amino Acid:
FGYFVPYVHLMKHVKDRFGD
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.7
0.67
0.9
77.5
34.7
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
78.9
0.89
1.4
85.61
31.9

Associated Gene:

Gene:
SLC16A10
Ensembl Gene ID:
ENSAPLG00000008970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009331
69103937 - 69164751
60815