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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69126927_69130169_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69126927 - 69130169
Intron Length:
3243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATA
Flanking Amino Acid:
FVGLLSSSFVSTIEPLYFTY
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81
0.7
0.9
76.3
36.9
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
66.8
0.52
1.1
74.7
30

Associated Gene:

Gene:
SLC16A10
Ensembl Gene ID:
ENSAPLG00000008970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009331
69103937 - 69164751
60815