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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69130315_69164369_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69130315 - 69164369
Intron Length:
34055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCTAAAACA
Flanking Amino Acid:
SEDRQMAFKTAWVSSLSMGM
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.8
0.81
0.7
80.9
30.8
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
55.7
0.18
1.9
71.7
40.8

Associated Gene:

Gene:
SLC16A10
Ensembl Gene ID:
ENSAPLG00000008970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009331
69103937 - 69164751
60815