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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6913573_6915347_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6913573 - 6915347

Intron Length:

1775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

AACTGTTGGTAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTAAC

U12 Branch Point Sequence:

AGCAAAGGAACT

Flanking Amino Acid:

LFNGLTLLILALVSNISHLT

Intron Amino Acid Position:

967

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

85.2

32.2

Major BPS

56.8

0.17

1.4

61.4

43.2

Major PPT

49.1

-0

1.2

52.5

45.4

Minor 5ss

38.2

-1.3

3.4

49.9

46.4

Minor BPS

36.4

-0.9

2.2

51.47

41.9

Associated Gene:

Gene:

RTN4

Ensembl Gene ID:

ENSAPLG00000005665

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005947

6882880 - 6915887

33008

ENSAPLT00000025046

6902497 - 6915887

13391