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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69183677_69183829_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69183677 - 69183829
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTTCCCTTACA
Flanking Amino Acid:
LSLKQPKALKPKKKKNISHD
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
79
35.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.4
0.82
0.7
80.2
25.2
Minor 5ss
35.9
-1.6
2.9
46.6
41.7
Minor BPS
61.7
0.36
2
76.43
40.4

Associated Gene:

Gene:
RPF2
Ensembl Gene ID:
ENSAPLG00000008812
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009187
69183497 - 69194897
11401