Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69183975_69184992_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

69183975 - 69184992

Intron Length:

1018

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTGAT

U12 Branch Point Sequence:

TTTTTTTTTTCT

Flanking Amino Acid:

LDGKIYMRSYKVLLKKSGCK

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

80.7

33.7

Major BPS

72.4

0.56

1.1

63.1

44.4

Major PPT

91.4

0.93

0.6

85.5

29.2

Minor 5ss

35.6

-1.6

2.8

42.7

38.3

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

RPF2

Ensembl Gene ID:

ENSAPLG00000008812

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009187

69183497 - 69194897

11401