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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69192625_69193538_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69192625 - 69193538
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTATTTTCATT
Flanking Amino Acid:
VKKPFAVLYKKKNITRPFED
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.7
81.1
23.9
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
49
0.01
1.7
65.7
40

Associated Gene:

Gene:
RPF2
Ensembl Gene ID:
ENSAPLG00000008812
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009187
69183497 - 69194897
11401