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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69197979_69198119_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69197979 - 69198119
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAGTA
Flanking Amino Acid:
CVVFEENTEHDAEGNQKVQL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
79.8
33.1
Major BPS
100
1.24
0.5
100
0
Major PPT
74.6
0.55
0.9
71.7
32.6
Minor 5ss
38.8
-1.3
3.4
55.1
44.4
Minor BPS
51.8
0.05
1.8
67.54
39.5

Associated Gene:

Gene:
GTF3C6
Ensembl Gene ID:
ENSAPLG00000008705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009054
69196540 - 69200648
4109