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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69198165_69198717_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69198165 - 69198717
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TAGTCCCTAAGG
Flanking Amino Acid:
DRYVFAGEYEDALGTCVVFE
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
81.7
0.71
0.8
76.9
32
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
52.3
-0
2.1
61.33
46

Associated Gene:

Gene:
GTF3C6
Ensembl Gene ID:
ENSAPLG00000008705
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009054
69196540 - 69200648
4109