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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69244920_69245443_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69244920 - 69245443
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
TAATGCTAGATT
Flanking Amino Acid:
KFVTTLFVNQSSKCRTVFSS
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
48.3
-0
2.1
68.22
43.1

Associated Gene:

Gene:
AMD1
Ensembl Gene ID:
ENSAPLG00000014874
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015526
69244779 - 69259075
14297