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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69245782_69246738_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
69245782 - 69246738
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
ACTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAAATTTTAACT
Flanking Amino Acid:
DGVTANDVTRMSGIRDLIPG
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
64.4
42.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.3
0.77
0.8
81.3
30
Minor 5ss
56.7
0.23
2.3
67.2
44
Minor BPS
69.3
0.68
1.2
78.49
37.4

Associated Gene:

Gene:
AMD1
Ensembl Gene ID:
ENSAPLG00000014874
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015526
69244779 - 69259075
14297