About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69247015_69247830_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69247015 - 69247830
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
GGTAAGTTAACT
Flanking Amino Acid:
EVEFLNEIFPNGAAYCMGRM
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
83.8
0.76
0.8
77.4
36.9
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
49.3
0.03
2.3
71.79
44.2

Associated Gene:

Gene:
AMD1
Ensembl Gene ID:
ENSAPLG00000014874
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015526
69244779 - 69259075
14297