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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69301631_69327410_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69301631 - 69327410
Intron Length:
25780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TGTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATGGAAATAACA
Flanking Amino Acid:
ISMSACREIALLRELKHPNV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
70.3
40.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
86.1
0.81
0.8
80.7
31.3
Minor 5ss
38.5
-1.3
3.3
54.8
43.4
Minor BPS
44
-0.4
2
57.17
41.5

Associated Gene:

Gene:
CDK19
Ensembl Gene ID:
ENSAPLG00000014702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024631
69286716 - 69394070
107355
ENSAPLT00000021364
69286716 - 69394070
107355
ENSAPLT00000015347
69286716 - 69390443
103728