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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69327522_69338649_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69327522 - 69338649
Intron Length:
11128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATGTTTCTACCT
Flanking Amino Acid:
LFDYAEHDLWHIIKFHRASK
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82
0.72
0.8
74.4
40.4
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
48.9
-0
1.9
70.03
41.4

Associated Gene:

Gene:
CDK19
Ensembl Gene ID:
ENSAPLG00000014702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024631
69286716 - 69394070
107355
ENSAPLT00000021364
69286716 - 69394070
107355
ENSAPLT00000015347
69286716 - 69390443
103728
ENSAPLT00000038796
69323293 - 69394070
70778