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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69338791_69366123_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69338791 - 69366123
Intron Length:
27333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AGTTGGTCAACT
Flanking Amino Acid:
HANWVLHRDLKPANILVMGE
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.3
0.79
0.9
76.9
42.1
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
46.3
-0.2
2.5
71.49
45.1

Associated Gene:

Gene:
CDK19
Ensembl Gene ID:
ENSAPLG00000014702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024631
69286716 - 69394070
107355
ENSAPLT00000021364
69286716 - 69394070
107355
ENSAPLT00000015347
69286716 - 69390443
103728
ENSAPLT00000038796
69323293 - 69394070
70778