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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69385455_69386981_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69385455 - 69386981
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TACTGTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TGTGTGTTTACT
Flanking Amino Acid:
YFQEDPLPTSDVFAGCQIPY
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
77.2
37.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
75.4
0.57
1
68.8
41.6
Minor 5ss
49
-0.1
2.5
65
40.2
Minor BPS
47.3
-0.1
2.4
71.99
44.9

Associated Gene:

Gene:
CDK19
Ensembl Gene ID:
ENSAPLG00000014702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024631
69286716 - 69394070
107355
ENSAPLT00000021364
69286716 - 69394070
107355
ENSAPLT00000015347
69286716 - 69390443
103728
ENSAPLT00000038796
69323293 - 69394070
70778