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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69387061_69390140_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69387061 - 69390140
Intron Length:
3080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAA
5'SS Class:
major
3'SS Sequence:
TTCTTCCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
GCAGAGGTAACG
Flanking Amino Acid:
EDEPEEKGDKNQQQQNQHQQ
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69
31.3
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
77.1
0.61
0.7
70.3
30.8
Minor 5ss
42.7
-0.8
3
55.5
48.7
Minor BPS
35
-1.2
2.5
37.34
44.7

Associated Gene:

Gene:
CDK19
Ensembl Gene ID:
ENSAPLG00000014702
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038796
69323293 - 69394070
70778
ENSAPLT00000024631
69286716 - 69394070
107355
ENSAPLT00000021364
69286716 - 69394070
107355