About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69390255_69390302_F


Intron Information:

Intron Rank:
12

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
69390255 - 69390302

Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
ACG|GCCGGCGGC

5'SS Class:
major

3'SS Sequence:
CGCCGGGCTCCAG|C

3'SS Class:
degenerate_major

U2 Branch Point Sequence:
GCGGCAC

U12 Branch Point Sequence:
GGCGCCGGGCTC

Flanking Amino Acid:
QQNSTQTNGTHSQDSSLNQV

Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
61.2
0.26
1.3
57.2
41.6

Major BPS
38
-0.7
1.4
36.7
42.3

Major PPT
57.7
0.17
1
45.4
41.4

Minor 5ss
20.9
-3.4
4.1
32.4
42.6

Minor BPS
25.4
-1.9
3.4
34.95
35.2

Associated Gene:

Gene:
CDK19

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

69286716 - 69390443
103728