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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69432729_69435197_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69432729 - 69435197
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTACTCATCA
Flanking Amino Acid:
GAVIFGDIADRLGRQRVIWF
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
76.3
0.59
1
69.5
40.7
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
57.6
0.24
2
77.03
39.7

Associated Gene:

Gene:
SLC22A16
Ensembl Gene ID:
ENSAPLG00000014519
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015132
69431309 - 69445825
14517