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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_69439457_69439849_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69439457 - 69439849
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
ICVLIMFIPQDFNVLIILAN
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.1
73.5
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.2
0.59
0.8
73.6
30
Minor 5ss
30.9
-2.2
2.7
35.9
40.8
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SLC22A16
Ensembl Gene ID:
ENSAPLG00000014519
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015132
69431309 - 69445825
14517